<%@ include file="/WEB-INF/common/header.jsp"%>
<head>
<title><fmt:message key="datasources.title" /></title>
<meta name="heading"
content="<fmt:message key='bioDatasourceList.heading'/>" />
<meta name="menu" content="AssociatedDatasourceMenu" />
<link rel="stylesheet" type="text/css" media="all"
href="<c:url value='/styles/jquery.dataTables.css'/>" />
<link rel="stylesheet" type="text/css" media="all"
href="<c:url value='/styles/dataTables.colVis.css'/>" />
<script type="text/javascript"
src="<c:url value='/scripts/jquery/jquery-1.11.1.min.js'/>"></script>
<script type="text/javascript"
src="<c:url value='/scripts/jquery/jquery.dataTables.js'/>"></script>
<script type="text/javascript"
src="<c:url value='/scripts/jquery/dataTables.colVis.js'/>"></script>
</head>
<body>
<p class="explainingText"><fmt:message key="datasources.explainingText" />
<br/> <br/>
List: <br/> <a href="${ctx}/associatedData/list.html?filter=none" class="underline">All</a>, <a
href="${ctx}/associatedData/list.html?filter=recent" class="underline">Recently
added</a>
<!-- <a href="${ctx}/associatedData/list.html?filter=deleted">Deleted</a> -->
<br/> Metadata Updaters: <a
href="${ctx}/associatedData/list.html?filter=updatersnone" class="underline">All</a>, <a
href="${ctx}/associatedData/list.html?filter=updatersbiocase" class="underline">BioCASE</a>,
<a href="${ctx}/associatedData/list.html?filter=updatersdigir" class="underline">DiGIR</a>,
<a href="${ctx}/associatedData/list.html?filter=updaterstapir" class="underline">TAPIR</a>,
<a href="${ctx}/associatedData/list.html?filter=updatersdwcarchive" class="underline">DwC
Archive</a>
<br/> Operators: <a
href="${ctx}/associatedData/list.html?filter=operatorsnone" class="underline">All</a>, <a
href="${ctx}/associatedData/list.html?filter=operatorsbiocase" class="underline">BioCASE</a>,
<a href="${ctx}/associatedData/list.html?filter=operatorsdigir" class="underline">DiGIR</a>,
<a href="${ctx}/associatedData/list.html?filter=operatorstapir" class="underline">TAPIR</a>,
<a href="${ctx}/associatedData/list.html?filter=operatorsdwcarchive" class="underline">DwC
Archive</a>
<br/>
Select: <span class="link" id="select_all">All</span>
<span class="link" id="select_none">None</span>
</p>
<!-- form 1 -->
<form id="gridForm" name="gridForm" method="post" validate="false">
<input type="hidden" name="${_csrf.parameterName}"
value="${_csrf.token}" />
<div id="data">
<table id="data_table" class="display compact" cellspacing="0"
width="100%">
<thead>
<tr>
<th>Available Methods
<th>Provider Name</th>
<th>Datasource</th>
<th>Associated from</th>
<th>URL</th>
<th>Nb. of expected associated units</th>
<th>Nb. of associated units harvested</th>
<th>Started</th>
<th>Last harvesting</th>
<th>Last harv. processed</th>
<th>Country</th>
</tr>
</thead>
<tbody>
<c:forEach items="${bioDatasources}" var="bioDatasource"
varStatus="loop">
<tr>
<td><c:choose>
<c:when
test="${not fn:contains(bioDatasource.harvesterFactory, 'Metadata') && ( bioDatasource.hasAssociatedData || bioDatasource.hasInternalAssociatedData) }">
<input type='checkbox' class='missingAsso'
name='datasourceBox'
id='datasource.${bioDatasource.id}' />
</c:when>
<c:otherwise>
<input type='checkbox' name='datasourceBox'
id='datasource.${bioDatasource.id}' />
</c:otherwise>
</c:choose> <input
type="hidden" id="datasource.${bioDatasource.id}"
value="true" /> <img
src="<c:url value='/images/expandCollapse.png'/>"
id='eye.${bioDatasource.id}' name='expColl'
title="expand/collapse methods" />
<div style="margin-left: 50px" name="methodsDiv"
class="hidden" id="methodsDiv.${bioDatasource.id}">
<c:choose>
<c:when
test="${fn:length(factories[loop.index].operations) <2}">
<c:forEach
items="${factories[loop.index].operations}"
var="operation" varStatus="counter">
<input type="checkbox"
name="datasource.${bioDatasource.id}:${operation.method}"
id="datasource.${bioDatasource.id}:${counter.index}"> <spring:message
code="${operation.i18nKey}" />
</input>
<br />
</c:forEach>
</c:when>
<c:otherwise>
<input type="checkbox"
name="datasource.${bioDatasource.id}:harvestAssociatedUnits"
id="datasource.${bioDatasource.id}:1"> <fmt:message
key='asso.harvestList' />
</input>
<br />
<input type="checkbox"
name="datasource.${bioDatasource.id}:processAssociatedUnits"
id="datasource.${bioDatasource.id}:2"> <fmt:message
key='asso.processList' />
</input>
<br />
<input type="checkbox"
name="datasource.${bioDatasource.id}:harvestSiblingUnits"
id="datasource.${bioDatasource.id}:3"> <fmt:message
key='harvestSiblingUnits' />
</input>
<br />
<input type="checkbox"
name="datasource.${bioDatasource.id}:processSiblingUnits"
id="datasource.${bioDatasource.id}:4"> <fmt:message
key='processSiblingUnits' />
</input>
<br />
<c:if
test="${not fn:contains(bioDatasource.harvesterFactory, 'Metadata') && ( bioDatasource.hasAssociatedData || bioDatasource.hasInternalAssociatedData) }">
<a
href="${ctx}/associatedData/configure.html?datasourceId=${bioDatasource.id}">Add
associated datasources</a>
</c:if>
</c:otherwise>
</c:choose>
<!-- on metadata harvester factories, we also want to grab the synchroniseMetadata operation -->
<c:forEach
items="${synchroniserFactoriez[loop.index]}"
var="fact" varStatus="counter">
<c:forEach items="${fact.operations}"
var="innerOperation">
<c:choose>
<c:when
test="${bioDatasource.harvesterFactory=='org.binhum.gbif.harvest.tapir.TapirHarvesterFactory'}">
<c:choose>
<c:when
test="${innerOperation.method=='synchroniseMetadata'}">
</c:when>
<c:otherwise>
<input type="checkbox"
name="datasource.${bioDatasource.id}:${innerOperation.method}"
id="datasource.${bioDatasource.id}:${counter.index}"> <spring:message
code="${innerOperation.i18nKey}" />
</input>
<br />
</c:otherwise>
</c:choose>
</c:when>
<c:when
test="${bioDatasource.harvesterFactory=='org.binhum.gbif.harvest.tapir.TapirMetadataFactory'}">
<c:choose>
<c:when
test="${innerOperation.method=='synchronise' || innerOperation.method=='extract'}">
</c:when>
<c:otherwise>
<input type="checkbox"
name="datasource.${bioDatasource.id}:${innerOperation.method}"
id="datasource.${bioDatasource.id}:${counter.index}"> <spring:message
code="${innerOperation.i18nKey}" />
</input>
<br />
</c:otherwise>
</c:choose>
</c:when>
<c:when
test="${bioDatasource.harvesterFactory=='org.binhum.gbif.harvest.digir.DigirHarvesterFactory'}">
<c:choose>
<c:when
test="${innerOperation.method=='synchroniseMetadata'}">
</c:when>
<c:otherwise>
<input type="checkbox"
name="datasource.${bioDatasource.id}:${innerOperation.method}"
id="datasource.${bioDatasource.id}:${counter.index}"> <spring:message
code="${innerOperation.i18nKey}" />
</input>
<br />
</c:otherwise>
</c:choose>
</c:when>
<c:when
test="${bioDatasource.harvesterFactory=='org.binhum.gbif.harvest.digir.DigirMetadataFactory'}">
<c:choose>
<c:when
test="${innerOperation.method=='synchronise' || innerOperation.method=='extract'}">
</c:when>
<c:otherwise>
<input type="checkbox"
name="datasource.${bioDatasource.id}:${innerOperation.method}"
id="datasource.${bioDatasource.id}:${counter.index}"> <spring:message
code="${innerOperation.i18nKey}" />
</input>
<br />
</c:otherwise>
</c:choose>
</c:when>
<c:when
test="${bioDatasource.harvesterFactory=='org.binhum.gbif.harvest.biocase.BiocaseHarvesterFactory'}">
<c:choose>
<c:when
test="${innerOperation.method=='synchroniseMetadata'}">
</c:when>
<c:otherwise>
<input type="checkbox"
name="datasource.${bioDatasource.id}:${innerOperation.method}"
id="datasource.${bioDatasource.id}:${counter.index}"> <spring:message
code="${innerOperation.i18nKey}" />
</input>
<br />
</c:otherwise>
</c:choose>
</c:when>
<c:when
test="${bioDatasource.harvesterFactory=='org.binhum.gbif.harvest.biocase.BiocaseMetadataFactory'}">
<c:choose>
<c:when
test="${innerOperation.method=='synchronise' || innerOperation.method=='extract'}">
</c:when>
<c:otherwise>
<input type="checkbox"
name="datasource.${bioDatasource.id}:${innerOperation.method}"
id="datasource.${bioDatasource.id}:${counter.index}"> <spring:message
code="${innerOperation.i18nKey}" />
</input>
<br />
</c:otherwise>
</c:choose>
</c:when>
<c:when
test="${bioDatasource.harvesterFactory=='org.binhum.gbif.harvest.dwcarchive.DwcArchiveHarvesterFactory'}">
<c:choose>
<c:when
test="${innerOperation.method=='synchroniseMetadata'}">
</c:when>
<c:otherwise>
<input type="checkbox"
name="datasource.${bioDatasource.id}:${innerOperation.method}"
id="datasource.${bioDatasource.id}:${counter.index}"> <spring:message
code="${innerOperation.i18nKey}" />
</input>
<br />
</c:otherwise>
</c:choose>
</c:when>
<c:when
test="${bioDatasource.harvesterFactory=='org.binhum.gbif.harvest.dwcarchive.DwcArchiveMetadataFactory'}">
<c:choose>
<c:when
test="${innerOperation.method=='synchronise' || innerOperation.method=='extract'}">
</c:when>
<c:otherwise>
<input type="checkbox"
name="datasource.${bioDatasource.id}:${innerOperation.method}"
id="datasource.${bioDatasource.id}:${counter.index}"> <spring:message
code="${innerOperation.i18nKey}" />
</input>
<br />
</c:otherwise>
</c:choose>
</c:when>
</c:choose>
<c:if
test="${(bioDatasasource.hasAssociatedData) || (bioDatasasource.hasInternalAssociatedData)}">
<a
href="${ctx}/associatedData/configure.html?datasourceId=${bioDatasource.id}">Add
associated datasources</a>
</c:if>
</div>
</c:forEach>
</c:forEach>
</td>
<td>${bioDatasource.providerName}</td>
<td>
<a href="${ctx}/datasource/edit.html?id=${bioDatasource.id}">
<c:choose>
<c:when test="${fn:contains(bioDatasource.harvesterFactory, 'Metadata')}">
<font color="darkOrange">${bioDatasource.name}</font>
</c:when>
<c:otherwise>
<font color="green">${bioDatasource.name}</font>
</c:otherwise>
</c:choose>
</a>
</td>
<td>
<div class="scrollTD">
<c:forEach items="${bioDatasource.associatedTo}"
var="institutionGroup">
${institutionGroup.key} :<br />
<c:forEach items="${institutionGroup.value}"
var="collec">
${collec}<br />
</c:forEach>
</c:forEach>
</div>
</td>
<td><a href='${bioDatasource.url}'>${bioDatasource.url}</a></td>
<td><c:if
test="${not fn:containsIgnoreCase(bioDatasource.harvesterFactory, 'Metadata')}">${bioDatasource.numberOfTheoreticalAssociatedUnits}</c:if>
</td>
<td><c:if
test="${not fn:containsIgnoreCase(bioDatasource.harvesterFactory, 'Metadata')}">${bioDatasource.numberOfAssociatedUnits}</c:if>
</td>
<td>${bioDatasource.started}</td>
<td>${bioDatasource.lastHarvested}</td>
<td>${bioDatasource.lastHarvestedProcessed}</td>
<td>${bioDatasource.country}</td>
</tr>
</c:forEach>
</tbody>
</table>
</div>
<div class="float-left">
<span> <c:choose>
<c:when test="${param.filter == 'deleted'}">
<span class="separator-right" style="font-style: italic;"><fmt:message
key="view.deleted" /></span>
</c:when>
<c:otherwise>
<input value="<fmt:message key="button.schedule"/>"
name="value" type="button" onclick="setAction('schedule')"
cssClass="button" theme="simple" />
<span class="hidden">
<select id="schedule" name="filterOps">
<option selected value="all">all</option>
<option value="onlyHarvesting">only harvesting</option>
<option value="onlyIndexing">only indexing</option>
</select>
</span> to run <select class="separator-right" id="schedule" name="filter"
onchange="if (this.options[this.selectedIndex].value=='once');
else if (this.options[this.selectedIndex].value=='every week');
else if (this.options[this.selectedIndex].value=='every 2 weeks');
else if (this.options[this.selectedIndex].value=='every 3 weeks');
else if (this.options[this.selectedIndex].value=='every 4 weeks');
else if (this.options[this.selectedIndex].value=='every 8 weeks');
else if (this.options[this.selectedIndex].value=='every 12 weeks');">
<option selected value="Once">once</option>
<option value="1week">every week</option>
<option value="2weeks">every 2 weeks</option>
<option value="3weeks">every 3 weeks</option>
<option value="4weeks">every 4 weeks</option>
<option value="8weeks">every 8 weeks</option>
<option value="12weeks">every 12 weeks</option>
</select>
</c:otherwise>
</c:choose> <span class="hidden"> <input type="button"
value="<fmt:message key="button.backup"/>"
onmouseover="showBackupHelp()" onmouseout="hideBackupHelp()"
onclick="setAction('clean')" cssClass="button" theme="simple" />
</span> <span style="display: none" id="backupHelpDiv"><fmt:message
key="backup.help" /></span> <span style="display: none"
id="deleteHelpDiv"><fmt:message key="delete.help" /></span>
</span>
</div>
<%-- <div class="float-right">
<span> <input type="button"
value="<fmt:message key="button.add"/>"
onclick="location.href='<c:out value="${ctx}/associatedData/edit.html?method=add"/>'"
theme="simple" />
</span>
</div> --%>
<div class="clear"></div>
</form>
<!-- form 2 -->
<form style="display: none" id="readFile" name="readFileForm"
action="<c:out value="${ctx}/files/readFile.htm?path=&type="/>">
<input type="hidden" name="${_csrf.parameterName}"
value="${_csrf.token}" /> <input name="path" type="hidden"
value="" /> <input name="type" type="hidden" value="" /> <input
type="submit" />
<form>
<script language="javascript">
function setupSearch(val) {
alert('value'+val);
return true;
}
function setAction(val){
if(val=="schedule"){
if (document.forms["gridForm"].filter.value!="Once") {
var answer = confirm("Auto-schedule the BioDatasource(s) checked?")
if (answer) {
document.forms["gridForm"].action="<c:out value="${ctx}/associatedData/scheduleOperations.html"/>";
document.forms["gridForm"].submit()
} else {
// do nothing
}
} else {
document.forms["gridForm"].action="<c:out value="${ctx}/associatedData/scheduleOperations.html"/>";
document.forms["gridForm"].submit()
}
}
else{
if (val=="clean") {
var answer = confirm("Backup the BioDatasource(s) checked?")
if (answer){
document.forms["gridForm"].action="<c:out value="${ctx}/associatedData/cleanDirectories.html"/>";
document.forms["gridForm"].submit()
} else {
// do nothing
}
}
}
}
function triggerForm(val, type){
if (val != null && type != null) {
document.forms["readFileForm"].path.value = val;
document.forms["readFileForm"].type.value = type;
document.forms["readFileForm"].submit();
} else {
alert("No directory exists for this BioDatasource");
}
}
function showBackupHelp() {
document.getElementById('backupHelpDiv').style.display = "block";
}
function hideBackupHelp() {
document.getElementById('backupHelpDiv').style.display = "none";
}
function alternate(divElement) {
var providerAlphabet = document.getElementById('providerAlphabet');
var datasourceAlphabet = document.getElementById('datasourceAlphabet');
var countryAlphabet = document.getElementById('countryAlphabet');
if (divElement == "providerAlphabet") {
providerAlphabet.style.display = "block";
datasourceAlphabet.style.display = "none";
countryAlphabet.style.display = "none";
} else if (divElement == "datasourceAlphabet") {
providerAlphabet.style.display = "none";
datasourceAlphabet.style.display = "block";
countryAlphabet.style.display = "none";
} else if (divElement == "countryAlphabet") {
providerAlphabet.style.display = "none";
datasourceAlphabet.style.display = "none";
countryAlphabet.style.display = "block";
} else {
providerAlphabet.style.display = "block";
datasourceAlphabet.style.display = "block";
countryAlphabet.style.display = "block";
}
}
// is the context path empty or not?
function returnContextPath() {
var cp = '${ctx}';
if (cp != '') {
return cp;
} else {
return null;
}
}
$(document).ready(function() {
$('img[name="expColl"]').click(function() {
var cid=$(this).attr('id');
if($(this).closest('td').find('div').css('display')=='none'){
$(this).closest('td').find('div').show(200);
$(this).closest('td').css("width","250px");
}else{
$(this).closest('td').find('div').hide(200);
}
});
$('#select_all').click(function() {
$('#gridForm').find(':checkbox').prop('checked', 'checked');
$('#gridForm').find(':checkbox').each(function( event ) {
$(this).closest('td').find('div').show(200);
$(this).closest('td').css("width","250px");
});
});
$('#select_none').click(function() {
$('#gridForm').find(':checkbox').prop('checked', null);
$('#gridForm').find(':checkbox').each(function( event ) {
$(this).closest('td').find('div').hide(200);
$(this).closest('td').css("width","25px");
});
});
$('input[name="datasourceBox"]').click(function(event) {
var cID= event.target.id.split(".")[1];
$(this).closest('td').find(':checkbox').prop('checked', this.checked);
if(this.checked){
$(this).closest('td').find('div').show(200);
$(this).closest('td').css("width","250px");
}
else
{
$(this).closest('td').find('div').hide(200);
var oneOpen=false;
$('#gridForm').find('div').each(function() {
var cid=$(this).attr('id');
if (cid !=null && cid.indexOf("method")>-1 )
if ($(this).css("display") == "display")
oneOpen=true;
});
if (!oneOpen)
$(this).closest('td').css("width","25px");
}
});
$('#data_table').DataTable( {
"oLanguage": {"sEmptyTable": "No associated datasource yet"},
dom: 'C<"clear">lfrtip',
"bAutoWidth": false,
"columnDefs": [
{
"render": function ( data, type, row ) {
if(data == row[5])
return '<b>'+data+'</b>';
else
return data;
},
"targets": 6
},
{
"render": function ( data, type, row ) {
var r = /^(\d{4})-(\d{1,2})-(\d{1,2}).*?$/
, m = (''+data).match(r);
return (m) ? m[3]+'-'+m[2]+'-'+m[1] : data;
},
"targets": [8,9]
},
]
} );
$('div[name="methodsDiv"]').hide();
} );
</script>