#!c:\Program Files\Python39\python.exe
# -*- coding: UTF-8 -*-
'''
$RCSfile: check_errors.cgi,v $
$Revision$
$Author: j.torre $
$Date$
The BioCASE TestingTool
'''
# ***** include the biocase.lib directory in the python sys path for importing *****
import os, sys
exec(open(os.path.abspath(os.path.join(os.path.dirname(__file__), os.path.pardir, os.path.pardir, 'lib', 'biocase', 'adjustpath.py'))).read())
#Import some stuff-----------------------------------------
import cgitb; cgitb.enable()
import cgi
import string
import os, sys
import inspect as _i
import os as _os
import os.path as _p
import urllib.request, urllib.parse, urllib.error
from xml.etree import ElementTree
import biocase.configuration
import logging, biocase.initlogs
biocase.initlogs.initWebappLogging()
# get config data
cfg=biocase.configuration.Cfg()
# Take parameters
form = cgi.FieldStorage()
#First query the wrapper with the XML sent
wrapper_url = cfg.getAccessPoint(form['dsa'].value)
protocolXML = form['search'].value
errors=[]
try:
params = urllib.parse.urlencode({'query': protocolXML, 'debug':form['debug'].value})
source = urllib.request.urlopen(wrapper_url, params)
except:
errors.append("Can't open wrapper URL %s" % wrapper_url)
# Use Elementtree to parse XML
try:
for event, elem in ElementTree.iterparse(source):
if elem.tag=='diagnostic' and 'severity' in elem.attrib and elem.attrib['severity']=="error":
errors.append(elem.text)
elem.clear()
except:
errors.append("Can't parse wrapper response. Seems to be no valid XML")
try:
errors.append("RESPONSE:\n%s" % data)
except:
pass
#Print the headers
print('Content-Type: text/html; charset=UTF-8')
print() # Blank line marking end of HTTP headers
print('''''')
if (len(errors)<1):
print('