Python Interpreter: %s
''' % string.join([str(i) for i in sys.version_info[:3]],".")
print '''
green: Ok! |
red: you have to install it |
orange: install the one for your database
Libraries required for core wrapper
| Library |
Installed Version |
Download Library |
'''
# biocase libs
print '''
| BioCASE lib |
'''
try:
import biocase
print '' + biocase.__version__ + ''
except:
print 'not installed'
print ''' |
BioCASE libs |
'''
# HTML
print'''
Libraries only needed for querytool:
| Library |
Installed Version |
Download Library |
'''
# 4suite
print '''
| 4Suite XML |
'''
try:
import Ft
print '' + Ft.__version__ + ''
except:
print 'not installed'
print ''' |
4Suite XML |
'''
# HTML
print '''
Status of additional database dependent drivers:
| Library |
Installed Version |
Download Library |
'''
# mxODBC
print '''
| ceODBC |
'''
try:
import ceODBC
print '' + ceODBC.version + ''
except:
print 'not installed'
print ''' |
ceODBC module |
'''
# pymssql
print '''
| pymssql |
'''
try:
import pymssql
print '' + pymssql.__version__ + ''
except:
print 'not installed'
print ''' |
MS SQL Server module (unix/win) |
'''
# psycopg2
print '''
| psycopg2 |
'''
try:
import psycopg2
print '' + psycopg2.__version__ + ''
except:
print 'not installed'
print ''' |
PostgreSQL module win binaries |
'''
# MySQLdb
print '''
| MySQLdb |
'''
try:
import MySQLdb
print '' + MySQLdb.__version__ + ''
except:
print 'not installed'
print ''' |
mySQL module |
'''
# cx_Oracle
print '''
| cx_Oracle |
'''
try:
import cx_Oracle
print '' + cx_Oracle.version + ''
except:
print 'not installed'
print ''' |
Oracle 8-9 module, you also need the Oracle Client |
'''
# kinterbasdb
print '''
| kinterbasdb |
'''
try:
import kinterbasdb
print '' + string.join([str(x) for x in kinterbasdb.__version__], ".") + ''
except:
print 'not installed'
print ''' |
Firebird/Interbase module |
'''
# SQLlite
print '''
| SQLlite |
'''
try:
import sqlite
print '' + sqlite.version + ''
except:
print 'not installed'
print ''' |
pySQLite module |
'''
# Sybase
print '''
| sybase |
'''
try:
import sybase
print '' + sybase.__version__ + ''
except:
print 'not installed'
print ''' |
Sybase module |
'''
# DETECT GRAPHVIZ, external binaries
if cfg.server.graphviz_dot is not None and os.path.isfile(cfg.server.graphviz_dot):
graphviz_status = '
%s' % "Binary found"
else:
graphviz_status = '
%s' % "Binary not found"
print '''
Optional external binaries:
| Binary |
Status |
Path |
| %s |
%s |
%s |
''' %('
Graphviz Dot', graphviz_status, cfg.server.graphviz_dot)
#
#Detect if the configuration and log folders are writable rescursively.
#
def folder_not_writable(path, verbose=False):
'''Returns "---" if folder is writable
or the absolute path of the directory or file that is not writable.'''
for root, dirs, files in os.walk(path):
if verbose:
print "
-->walk dir: %s"%(root)
# check directories by creating a test dummy file
for name in dirs:
fn = os.path.join(root, name, 'dummy1973TestomatKarambolaIggI')
try:
f = file(fn, 'a')
except:
if verbose:
print "
DIR %s IS NOT WRITABLE !!!"%(fn)
return os.path.join(root, name)
f.close()
os.unlink(fn)
if verbose:
print "
dir %s is writable."%( os.path.join(root, name) )
# check if files are writable by opening them for appending
for name in files:
fn = os.path.join(root, name)
try:
f = file(fn, 'a')
except:
if verbose:
print "
FILE %s IS NOT WRITABLE !!!"%(fn)
return fn
if verbose:
print "
file %s is writable."%(fn)
return None
statusCfg = folder_not_writable(cfg.configurationLocator)
if statusCfg is None:
config_folder_writable_status = '
Writeable'
else:
config_folder_writable_status = '
Unwriteable'
statusLog = folder_not_writable(cfg.logLocator)
if statusLog is None:
log_folder_writable_status = '
Writeable'
else:
log_folder_writable_status = '
Unwriteable'
# HTML
print '''
Status of writable directories and files:
| Directory |
Status |
Path to problematic file |
| Configuration |
%s |
%s |
| Log |
%s |
%s |
''' %(config_folder_writable_status, str(statusCfg), log_folder_writable_status, str(statusLog))
print '''
'''
