#!c:\Program Files\Python39\python.exe # **************************************** # +++ BioCASE # +++ pywrapper # # See http://www.biocase.org for details # # **************************************** import os, cgi # ***** include the biocase.lib directory in the python sys path for module importing ***** exec(open(os.path.abspath(os.path.join(os.path.dirname(__file__), os.path.pardir, 'lib', 'biocase', 'adjustpath.py'))).read()) import biocase.configuration cfg = biocase.configuration.Cfg() import logging, biocase.initlogs log = logging.getLogger("pywrapper") from biocase.wrapper.pywrapper import pywrapper # get datasource alias from GET querystring if "QUERY_STRING" in os.environ: QS = cgi.parse_qs( os.environ["QUERY_STRING"] ) if 'dsa' in QS: dsa = QS['dsa'][0] elif 'DSA' in QS: dsa = QS['DSA'][0] elif 'datasource' in QS: dsa = QS['datasource'][0] else: raise "No Datasource alias given!" log.info("Datasource used: %s"%dsa) else: raise "No querystring given. Pass at least a datasource alias via dsa=XXX!" biocase.initlogs.initWrapperLogging(dsa) pywInstance = pywrapper('species2000', dsa=dsa) # create a request from CGI log.debug("pywInstance.parseRequest...") pywInstance.parseRequest() # print the result to the stream log.debug("pywInstance.doResponse...") pywInstance.doResponse(httpHeader=1) log.info("PyWrapper response successful")