<?php
/**
* extracting data from original specimen data provider, following DarwinCore format, using DOM
* <br/><br/>
* @author Gabriele Droege, DNA Bank Network <contact@dnabank-network.org>
* @version 2.0
* @package Input
* @copyright Copyright © 2011 DNA Bank Network http://www.dnabank-network.org<br>The contents of this file are subject to the Mozilla Public License Version 1.1
* @filesource
* @license http://www.mozilla.org/MPL/ MPL
*/
$Units = $dom->getElementsByTagName('record');

  foreach ($Units as $Unit) {

   $UnitID1 = $Unit->getElementsByTagName('CatalogNumberText');
   $UnitID2 = $Unit->getElementsByTagName('CatalogNumber');
   
   $UnitID1node = $UnitID1->item(0)->nodeValue;
   $UnitID2node = $UnitID2->item(0)->nodeValue;
   
    if(empty($UnitID1node)) { $UnitIDfinal = $UnitID2node; }
    else { $UnitIDfinal = $UnitID1node;}
    $SourceInstitutionCode = $Unit->getElementsByTagName('InstitutionCode');
    $SourceName = $Unit->getElementsByTagName('CollectionCode');

 //   echo "Unit ID: " . $UnitIDfinal. "<br>";
 //   echo "Source Institution: " . $SourceInstitutionCode->item(0)->nodeValue . "<br>";
 //   echo "Source Collection: " . $SourceName->item(0)->nodeValue . "<br>";

    $sqlUnitID = addslashes($UnitIDfinal);

    $sqlSourceInstitutionCode = addslashes($SourceInstitutionCode->item(0)->nodeValue);
    $sqlSourceName = addslashes($SourceName->item(0)->nodeValue);

/*----------------------------GATHERING--------------------------------------------------------- */    
 
    $GatheringYear = $Unit->getElementsByTagName('YearCollected');
    $GatheringMonth = $Unit->getElementsByTagName('MonthCollected');
    $GatheringDay = $Unit->getElementsByTagName('DayCollected');
    $GatheringAgents = $Unit->getElementsByTagName('Collector');
    $ContinentOrOcean = $Unit->getElementsByTagName('ContinentOcean');
    $Locality = $Unit->getElementsByTagName('Locality');
    $Country = $Unit->getElementsByTagName('Country');
    $StateProvince = $Unit->getElementsByTagName('StateProvince');
    $County = $Unit->getElementsByTagName('County');
    $Longitude = $Unit->getElementsByTagName('Longitude');
    $Latitude = $Unit->getElementsByTagName('Latitude');
    $Altitude = $Unit->getElementsByTagName('Altitude');
    
    $sqlCollectionDate = $GatheringDay->item(0)->nodeValue;
    if ($GatheringDay) {
    $sqlCollectionDate .= "."; }
    $sqlCollectionDate .= $GatheringMonth->item(0)->nodeValue;
    if ($GatheringMonth) {
    $sqlCollectionDate .= "."; }
    $sqlCollectionDate .= $GatheringYear->item(0)->nodeValue;
    $sqlPersonName = addslashes($GatheringAgents->item(0)->nodeValue);
    $sqlLocality = addslashes($StateProvince->item(0)->nodeValue);
    if ($StateProvince) {
    $sqlLocality .= " "; }
    $sqlLocality .= addslashes($County->item(0)->nodeValue);
    if ($County) {
    $sqlLocality .= " "; }
    $sqlLocality .= addslashes($Locality->item(0)->nodeValue);
    $sqlLongitude = $Longitude->item(0)->nodeValue;    
    $sqlLatitude = $Latitude->item(0)->nodeValue;
    $sqlAltitude = addslashes($Altitude->item(0)->nodeValue);
    $sqlContinentOrOcean = addslashes($ContinentOrOcean->item(0)->nodeValue);
    $sqlCountryName = addslashes($Country->item(0)->nodeValue); 

/*----------------------------IDENTIFICATIONS--------------------------------------------------------- */

     $NameAuthorYearString = $Unit->getElementsByTagName('ScientificName');     // Name, Author, Year
     
     $Kingdom = $Unit->getElementsByTagName('Kingdom');
     $Phylum = $Unit->getElementsByTagName('Phylum');
     $Class = $Unit->getElementsByTagName('Class');
     $Order = $Unit->getElementsByTagName('Order');
     $Family = $Unit->getElementsByTagName('Family');
   
    $HigherTaxon = array ($Kingdom->item(0)->nodeValue, $Phylum->item(0)->nodeValue, $Class->item(0)->nodeValue, $Order->item(0)->nodeValue, $Family->item(0)->nodeValue);
    $HigherTaxonRank = array ("Kingdom", "Phylum", "Class", "Order", "Family");   
    
        $sqlHigherTaxon = array ($Kingdom->item(0)->nodeValue, $Phylum->item(0)->nodeValue, $Class->item(0)->nodeValue, $Order->item(0)->nodeValue, $Family->item(0)->nodeValue);
    

      if($sqlHigherTaxon[0]) {    
      $sqlHigherTaxonRank[0] = $HigherTaxonRank[0]; }
      if($sqlHigherTaxon[1]) {    
      $sqlHigherTaxonRank[1] = $HigherTaxonRank[1]; }
      if($sqlHigherTaxon[2]) {          
      $sqlHigherTaxonRank[2] = $HigherTaxonRank[2]; }
      if($sqlHigherTaxon[3]) {          
      $sqlHigherTaxonRank[3] = $HigherTaxonRank[3]; }
      if($sqlHigherTaxon[4]) {          
      $sqlHigherTaxonRank[4] = $HigherTaxonRank[4]; }
      
     
     $Genus = $Unit->getElementsByTagName('Genus');
     $Subgenus = $Unit->getElementsByTagName('Subgenus');
     $SpeciesEpithet = $Unit->getElementsByTagName('Species');
     $SubspeciesEpithet = $Unit->getElementsByTagName('Subspecies');
     $Rank = $Unit->getElementsByTagName('InfraspecificRank');
             
  //       echo "Genus: " . $Genus->item(0)->nodeValue . "<br>";
         $sqlGenus = $Genus->item(0)->nodeValue;
  //       echo "Subgenus: " . $Subgenus->item(0)->nodeValue . "<br>";
         $sqlSubgenus = $Subgenus->item(0)->nodeValue;         
  //       echo "Spec.Epi: " . $SpeciesEpithet->item(0)->nodeValue . "<br>";
         $sqlFirstEpithet = $SpeciesEpithet->item(0)->nodeValue;          
  //       echo "Rank: " . $Rank->item(0)->nodeValue . "<br>";
         $sqlRank = $Rank->item(0)->nodeValue;          
  //       echo "SspEpi: " . $SubspeciesEpithet->item(0)->nodeValue . "<br>";
         $sqlSecondEpithet = $SubspeciesEpithet->item(0)->nodeValue;

  //       echo "Name All: " . $NameAuthorYearString->item(0)->nodeValue . "<br>";
         $sqlNameAuthorYearString = addslashes($NameAuthorYearString->item(0)->nodeValue);

         
/*----------------------------------------MULTI MEDIA OBJECTS -----------------------------*/
  $MultiMediaObjects = $Unit->getElementsByTagName('ImageURL');

     $sqlFileURI = $MultiMediaObjects->item(0)->nodeValue;
  
//  $TypeStatus = $TypeDesignation->getElementsByTagName('TypeStatus');
//     $sqlTypeStatus = $TypeStatus->item(0)->nodeValue;

}


?>