#!/usr/bin/env python
# -*- coding: utf-8 -*-
import sys, os, cherrypy, kid
# use logging
import logging, logging.config
log = logging.getLogger("div")
# --------------------------------------------------------------------------------
import page
from construction import UnderConstruction
from search.search import Search,Units,U_AdvancedSearch, U_SimpleSearch,GBIFagreement
from search.units.popup import Popup
#from search.map.map import Map
from preferences.preferences import Preferences
from thesaurusconf.thesaurusConf import ThesaurusConf
from help.help import Help
from about.about import About,AboutBG, AboutB, AboutAck,AboutData,AboutHer
from registry.registry import Host,Datasources,Registry,Collections
from contrib.contributors import Contributors
from links.links import Links
from partner.partner import Partner
from results.units.result import U_Preview,U_Results,U_Syncon,U_Details,U_Annotation
from results.units.alert import QuotaAlert
from requestHandler.props import *
from requestHandler.units.queryManager import U_QueryManager
from biocase.downloading.downloadManager import Confirmation, Validation
import caractersHandling as _carac
from thesaurus.ThesaurusLoader import TransformXmlForThesaurus
#from spreadsheets.spreadsheet import Spreadsheet
from cherrypy import _cperror, _cputil as ut
import StringIO,smtplib,sha,random,time
retry=0
def handle_error():
import StringIO,string
cherrypy.response.status = 500
myPage = page.Page()
mess = str(cherrypy._cputil.formatExc())
global retry
try:
if 'insecure string pickle' in mess:
if retry == 0:
retry=1
cherrypy.response.status = 302
comingFrom = cherrypy.request.headerMap.get('Referer','%s'%myPage.getCfgObj().webroot)
cherrypy.response.headers['Location'] = comingFrom
return
if 'mismatched tag' in mess and 'annotation.py' in mess:
file=open("%s"%cherrypy.config.get('erreurAnnotation'),"r")
retry=1
else:
file = open("%s"%cherrypy.config.get('erreur'),"r")
retry=1
contenu = file.read()
file.close()
except Exception,e:
log.info(e)
contenu= ["Sorry, an error occured with the server.
Please try again later.
If this error occures again, you might have to delete your cookies for the current domaine and browser cache."]
if retry ==1:
cherrypy.response.body = contenu
#cherrypy.response.body = ["Sorry, an error occured with the server.
Please try again later.
If this error occures again, you might have to delete your cookies for the current domaine and browser cache."]
fromaddr =("From: %s"%myPage.getCfgObj().server.websiteTitle)
toaddrs = string.splitfields('%s'%myPage.getCfgObj().server.debugMail)
subject = 'Error in %s'%myPage.getCfgObj().server.websiteTitle
try:
mess+="\n language: %s"%cherrypy.session.get('lang','nolang')
mess+="\n full session"
for k in cherrypy.session.keys():
mess+="\n \t %s %s"%(k,str(cherrypy.session.get(k)))
except:
pass
if "googlebot" not in mess.lower() and "google" not in mess.lower() and 'too many values to unpack' not in mess:
body = string.join((
"Subject: %s" % subject,
"",
mess), "\r\n")
# The actual mail send
server = smtplib.SMTP('%s'%myPage.getCfgObj().server.smtp)
try:
server.sendmail(fromaddr, toaddrs, body)
except Exception, e:
log.info("pb with the smtp for logging errors %s" %e)
retry=0
server.quit()
class Empty(object):
pass
class Site(page.Page):
#_instance = None
##singleton
#def __new__( cls, *args, **kwargs ):
#'''Init the website. Read global configs and update the CherryPy settings.'''
#if not cls._instance:
#cls._instance = super( Site, cls ).__new__(
#cls, *args, **kwargs )
#self=cls._instance
#page.Page.__init__(self)
#return cls._instance
@cherrypy.expose
def deleteSession(self):
try:
#delete the old cookie
cherrypy.response.simple_cookie['%s'%self.getCfgObj().server.cookieName]['expires'] = 0
except Exception,e:
log.info("couldn't erase the session %s"%e)
pass
self.redirect('/index')
@cherrypy.expose
def index(self, *args, **kwargs):
if len(args) > 0:
if 'session' in args:
for k in cherrypy.session.keys():
cherrypy.session.pop(k)
action = cherrypy.session.get('action',"")
if 'unitName' not in action:
action = action+"; giveFocus('unitName')"
cherrypy.session['message']=''
#load the specimen of the day from the database and save the data in the session
self.loadSpecimenOfTheDay()
javascript=''%(self.getCfgObj().server.webroot,self.getCfgObj().server.webroot)
### temporary index page change
f = open("/home/biocase/vh/webapp/static/startpage.html")
content = "".join(f.readlines())
f.close
return content; # following code won't be executed => no kid templates
### /temporary
# ####
# ####thesaurus staff----------------------------------------------
# ####
# listStr = self.getCfgObj().checklist.thesauri
# tmp = listStr.split("(")
# tklist={}
# for cell in tmp:
# tmp2 = cell.split(")")
# for case in tmp2:
# cell = case.split(",")
# if len(cell)==2:
# tklist[cell[0]]=cell[1]
# cherrypy.session['checklistDic'] = tklist
# self.checklist = cherrypy.session.get('checklistDic').keys()
#
# try:
# self.checklistsdict = cherrypy.session.get('checklists')
# tmp = self.checklistsdict.keys()
# except:
# tmp = TransformXmlForThesaurus().loadReferences()
# self.checklistsdict = cherrypy.session.get('checklists')
# thesaurus={}
# for key in self.checklistsdict.keys():
# if key in self.checklist:
# thesaurus[key]=self.checklistsdict.get(key)
#clist = cherrypy.session.get('metaCountryList')
##load the list of country for the metadata search and save it in the session
#if clist is None:
#self.loadCountryList()
if len(args) > 0:
if 'session' in args:
reason = "Session expired"
# return self.render(filePath='', fileName='_index.kid', body='index', title='%s index'%self.getCfgObj().server.websiteTitle,reason = reason, specimenName=cherrypy.session.get('specimenName'), unitID=cherrypy.session.get('unitID'), collectionID=cherrypy.session.get('collectionID'), institutionID=cherrypy.session.get('institutionID'), resourceKey=cherrypy.session.get('resourceKey'), specBioKey=cherrypy.session.get('specBioKey'),action=action,javascript=javascript, specimenofthedaypic=cherrypy.session.get('specimenofthedaypic'),thesaurusList=thesaurus)
return self.render(filePath='', fileName='_index.kid', body='index', title='%s index'%self.getCfgObj().server.websiteTitle,reason = reason, specimenName=cherrypy.session.get('specimenName'), unitID=cherrypy.session.get('unitID'), collectionID=cherrypy.session.get('collectionID'), institutionID=cherrypy.session.get('institutionID'), resourceKey=cherrypy.session.get('resourceKey'), specBioKey=cherrypy.session.get('specBioKey'),action=action,javascript=javascript, specimenofthedaypic=cherrypy.session.get('specimenofthedaypic'))
#specBioKey=cherrypy.session.get('specBioKey'), countryList=cherrypy.session.get('metaCountryList'),action=action, specimenofthedaypic=cherrypy.session.get('specimenofthedaypic'))
else:
reason=None
#return self.redirect('/index')
# return self.render(filePath='', fileName='_index.kid', body='index', title='%s index'%self.getCfgObj().server.websiteTitle, reason = None, specimenName=cherrypy.session.get('specimenName'), unitID=cherrypy.session.get('unitID'), collectionID=cherrypy.session.get('collectionID'), institutionID=cherrypy.session.get('institutionID'), resourceKey=cherrypy.session.get('resourceKey'),javascript=javascript,
# specBioKey=cherrypy.session.get('specBioKey'),
# #countryList=cherrypy.session.get('metaCountryList'),
# action=action, specimenofthedaypic=cherrypy.session.get('specimenofthedaypic'),thesaurusList=thesaurus)
return self.render(filePath='', fileName='_index.kid', body='index', title='%s index'%self.getCfgObj().server.websiteTitle, reason = None, specimenName=cherrypy.session.get('specimenName'), unitID=cherrypy.session.get('unitID'), collectionID=cherrypy.session.get('collectionID'), institutionID=cherrypy.session.get('institutionID'), resourceKey=cherrypy.session.get('resourceKey'),javascript=javascript,
specBioKey=cherrypy.session.get('specBioKey'), action=action, specimenofthedaypic=cherrypy.session.get('specimenofthedaypic'))
def loadSpecimenOfTheDay(self):
'''
for the index page
search in the database the specimen of the day
save the name, the unitID, the collID, the instID, the resourceKey and the picture's name in the current session
'''
log.info('in loadspecimenoftheday')
if cherrypy.session.get('specimenName',"") == "":
_cfgObj = self.getCfgObj()
propertiesFile = _cfgObj.queriesUnitLevelLocator %_cfgObj.admin.unitsDatabase
if not(os.access(propertiesFile, os.R_OK|os.F_OK)):
log.debug("\tNo read access to Properties File ",propertiesFile, "Quitting")
self._propsFile = props(_cfgObj.queriesUnitLevelLocator %_cfgObj.admin.unitsDatabase)
self.qmg = U_QueryManager(self._propsFile,self.getCfgObj())
res= self.qmg.getSpecimenOfTheDay()
log.info("loadSpecimenOfTheDay res: %s" % res)
if res is not None and res != []:
cherrypy.session['specimenName']=res[0][0]
cherrypy.session['unitID']=_carac.encodeCaracters(res[0][1])
cherrypy.session['collectionID']=_carac.encodeCaracters(res[0][2])
cherrypy.session['institutionID']=_carac.encodeCaracters(res[0][3])
cherrypy.session['resourceKey']=res[0][4]
cherrypy.session['specimenofthedaypic']=str(res[0][5]).replace('-','_')+".jpg"
else:
cherrypy.session['specimenName']=""
cherrypy.session['unitID']=""
cherrypy.session['collectionID']=""
cherrypy.session['institutionID']=""
cherrypy.session['resourceKey']=""
cherrypy.session['specimenofthedaypic']=""
#def loadCountryList(self):
#'''
#search the list of countries in the CORM-v2 database and store it in the current session
#'''
#_cfgObj = self.getCfgObj()
#propertiesFile = _cfgObj.queriesMetadataLevelLocator
#if not(os.access(propertiesFile, os.R_OK|os.F_OK)):
#log.debug("\tNo read access to Properties File ",propertiesFile, "Quitting")
#self._propsFile = props(_cfgObj.queriesMetadataLevelLocator)
#if cherrypy.session.get('metaCountryList',[])==[]:
#qmg = M_QueryManager(self._propsFile,self.getCfgObj())
#res= qmg.getCountryList()
##log.info("country list: %s" %res)
#if res is not None:
#cherrypy.session['metaCountryList'] = res;
@cherrypy.expose
def default(self, *args, **kwargs):
'''
used for the pages, which don't already have a handler (ie. static files)
'''
if len(args) > 0 and 'zip' in str(args):
return ["The file you asked for does no more exist."]
return self.redirect('/index')
cherrypy._cp_config = {'request.error_response': handle_error}
ut._cp_on_error=handle_error
# --- applications ---
search = Search()
search.units = Units()
search.units.popup = Popup()
search.units.advancedSearch = U_AdvancedSearch()
search.units.simpleSearch = U_SimpleSearch()
search.units.simpleSearch.query1=U_SimpleSearch().query1
search.units.advancedSearch.performAdvancedSearch=U_AdvancedSearch().performAdvancedSearch
search.units.alert = QuotaAlert()
search.units.gbifAgreement=GBIFagreement()
search.units.confirmation = Confirmation()
search.units.validation = Validation()
search.units.preview = U_Preview()
search.units.preview.refineQuery= U_Preview().refineQuery
search.units.preview.see= U_Preview().see
search.units.preview.calculate=U_Preview().calculate
search.units.preview.upload=U_Preview().upload
search.units.preview.seeResult=U_Preview().seeResult
search.units.preview.performFuzzySearch=U_Preview().performFuzzySearch
search.units.preview.dlAllFromCache=U_Preview().dlAllFromCache
search.units.syncon = U_Syncon()
search.units.results = U_Results()
search.units.results.setCurrentPage = U_Results().setCurrentPage
search.units.results.sortBy = U_Results().sortBy
search.units.results.displayUnitsWithMulti = U_Results().displayUnitsWithMulti
search.units.results.dlListDetails= U_Results().dlListDetails
search.units.results.toggleViewMode= U_Results().toggleViewMode
search.units.details = U_Details()
search.units.details.dlListDetails=U_Details().dlListDetails
search.units.details.getDetails=U_Details().getDetails
search.units.details.isavailable=U_Details().isavailable
search.units.details.downloadXML=U_Details().downloadXML
search.units.details.seeXML=U_Details().seeXML
search.units.details.getListDetails=U_Details().getListDetails
search.units.details.foreignServiceResults = U_Details().foreignServiceResults
search.units.annotation = U_Annotation()
search.units.annotation.seeAnnotation = U_Annotation().seeAnnotation
search.units.annotation.seeOriginal= U_Annotation().seeOriginal
search.units.annotation.see = U_Annotation().see
search.units.annotation.dl = U_Annotation().dl
search.units.annotation.compare = U_Annotation().compare
registry = Registry()
registry.hosts = Host()
registry.datasources = Datasources()
registry.collections = Collections()
preferences = Preferences()
thesaurusConf = ThesaurusConf()
help = Help()
about = About()
about.bioCASE_and_GBIF = AboutBG()
about.bioCASE = AboutB()
about.acknowledgement = AboutAck()
about.terms = AboutData()
about.herbar = AboutHer()
contributors = Contributors()
links = Links()
partner = Partner()